A summarization method to estimate allele-specific copy number signals for Affymetrix SNP microarrays using non-negative matrix factorization (NMF).
| Version: |
0.8.1 |
| Depends: |
R (≥ 3.0.0), aroma.affymetrix (≥ 2.14.0) |
| Imports: |
MASS, R.methodsS3 (≥ 1.7.0), R.oo (≥ 1.19.0), R.utils (≥
2.1.0), matrixStats (≥ 0.14.2), R.filesets (≥ 2.9.0), aroma.core (≥ 2.14.0) |
| Suggests: |
DNAcopy |
| Published: |
2015-10-27 |
| Author: |
Maria Ortiz [aut],
Henrik Bengtsson [aut, cre, cph],
Angel Rubio [aut] |
| Maintainer: |
Henrik Bengtsson <henrikb at braju.com> |
| BugReports: |
https://github.com/HenrikBengtsson/ACNE/issues |
| License: |
LGPL-2.1 | LGPL-3 [expanded from: LGPL (≥ 2.1)] |
| URL: |
https://github.com/HenrikBengtsson/ACNE |
| NeedsCompilation: |
no |
| Materials: |
NEWS |
| CRAN checks: |
ACNE results |