IBDsim: Simulation of Chromosomal Regions Shared by Family Members

Simulation of segments shared identical-by-descent (IBD) by pedigree members. Using sex specific recombination rates along the human genome (Kong et. al (2010) <doi:10.1038/nature09525>), phased chromosomes are simulated for all pedigree members, either by unconditional gene dropping or conditional on a specified IBD pattern. Additional functions provide summaries and further analysis of the simulated genomes.

Version:	0.9-8
Depends:	R (≥ 3.3), paramlink (≥ 1.1)
Imports:	stats
Published:	2019-04-06
Author:	Magnus Dehli Vigeland
Maintainer:	Magnus Dehli Vigeland <m.d.vigeland at medisin.uio.no>
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation:	yes
Materials:	NEWS
CRAN checks:	IBDsim results

Documentation:

Reference manual:

IBDsim.pdf

Downloads:

Package source:	IBDsim_0.9-8.tar.gz
Windows binaries:	r-devel: IBDsim_0.9-8.zip, r-release: IBDsim_0.9-8.zip, r-oldrel: IBDsim_0.9-8.zip
macOS binaries:	r-release (arm64): IBDsim_0.9-8.tgz, r-oldrel (arm64): IBDsim_0.9-8.tgz, r-release (x86_64): IBDsim_0.9-8.tgz, r-oldrel (x86_64): IBDsim_0.9-8.tgz
Old sources:	IBDsim archive

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