MBNMAdose 0.4.1

The goal of MBNMAdose is to provide a collection of useful commands that allow users to run dose-response Model-Based Network Meta-Analyses (MBNMA). This allows evidence synthesis of studies that compare multiple doses of different agents in a way that can account for the dose-response relationship.

Whilst making use of all the available evidence in a statistically robust and biologically plausible framework, this also can help connect networks at the agent level that may otherwise be disconnected at the dose/treatment level, and help improve precision of estimates(Pedder et al. 2021). It avoids “lumping” of doses that is often done in standard Network Meta-Analysis (NMA). All models and analyses are implemented in a Bayesian framework, following an extension of the standard NMA methodology presented by (Lu and Ades 2004) and are run in JAGS (Just Another Gibbs Sampler). For full details of dose-response MBNMA methodology see Mawdsley et al. (2016). Throughout this package we refer to a treatment as a specific dose or a specific agent.

A short introductory YouTube video from the ESMAR Conference 2021 can be found here

Installation

On CRAN you can easily install the current release version of MBNMAdose from CRAN with:

install.packages("MBNMAdose")

For the development version the package can be installed directly from GitHub using the devtools R package:

# First install devtools
install.packages("devtools")

# Then install MBNMAdose directly from GitHub
devtools::install_github("hugaped/MBNMAdose")

Workflow

Functions within MBNMAdose follow a clear pattern of use:

1. Load your data into the correct format using mbnma.network()
2. Analyse your data using mbnma.run() with a wide range of dose-response functions
3. Examine model results using forest plots and treatment rankings
4. Check model fit and test for consistency using functions like mbnma.nodesplit()
5. Use your model to predict responses using predict()
6. Calculate relative effects between any doses (even those not in the original dataset) using get.relative()

At each of these stages there are a number of informative plots that can be generated to help understand the data and to make decisions regarding model fitting. Exported functions in the package are connected like so:

MBNMAdose package structure: Light green nodes represent classes and the generic functions that can be applied to them. Dashed boxes indicate functions that can be applied to objects of specific classes

References