MonoPhy: Explore Monophyly of Taxonomic Groups in a Phylogeny
Requires rooted phylogeny as input and creates a table of genera, their monophyly-status, which taxa cause problems in monophyly etc. Different information can be extracted from the output and a plot function allows visualization of the results in a number of ways.
"MonoPhy: a simple R package to find and visualize monophyly issues." Schwery, O. & O'Meara, B.C. (2016) <doi:10.7717/peerj-cs.56>.
| Version: |
1.3 |
| Depends: |
ape, phytools, phangorn, RColorBrewer, taxize |
| Suggests: |
knitr, testthat, paleotree, rmarkdown |
| Published: |
2021-02-17 |
| Author: |
Orlando Schwery [aut, cre],
Brian C. O'Meara [aut, ctb],
Peter Cowman [ctb] |
| Maintainer: |
Orlando Schwery <oschwery at vols.utk.edu> |
| License: |
GPL-3 |
| NeedsCompilation: |
no |
| Citation: |
MonoPhy citation info |
| CRAN checks: |
MonoPhy results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=MonoPhy
to link to this page.