arankacami.groundnut.uniformity, barrero.maize, buntaran.wheat, gomez.heterogeneity, grover.diallel, grover.rcb.subsample, hadasch.lettuce, hadasch.lettuce.markers, jones.corn.uniformity, petersen.sorghum.cowpea, woodman.pig
Re-named mead.cowpeamaize to
mead.cowpea.maize.
Re-named correa.soybean.uniformity to
dasilva.soybean.uniformity.
There are more than 200 URLs in the vignettes and these were slow to check and generated too many false warnings. Stopped the Rmd to html conversion from creating URL links via an option in the Rmd YAML.
damesa.maize, jayaraman.bamboo, nair.turmeric.uniformity, shafi.tomato.uniformity
alwan.lamb, baker.strawberry.uniformity, besag.checks, bryan.corn.uniformity, davidian.soybean, devries.pine, edwards.oats, george.wheat, hartman.tomato.uniformity, heath.raddish.uniformity, johnson.douglasfir, kayad.alfalfa, kerr.sugarcane.uniformity, laycock.tea.uniformity, lehmann.millet.uniformity, linder.wheat, loesell.bean.uniformity, miguez.biomass, obsi.potato.uniformity, paez.coffee.uniformity, pederson.lettuce.repeated, piepho.barley.uniformity, rothamsted.oats, shaw.oats, wyatt.multi.uniformity
Examples now use asreml version 4.
Re-named hutchinson.cotton.uniformity to
panse.cotton.uniformity.
Added INLA example to crowder.seeds.
Wrapped most example sections with dontrun.
New function libs(), which is basically the same as
pacman::p_load(), but without the dependency on
pacman.
Example sections now use library(agridat) and then
libs() to load all other packages on the fly if
needed.
Website built with pkgdown.
broom package.ansari.wheat.uniformity, baker.wheat.uniformity, bancroft.peanut.uniformity, bose.multi.uniformity, christidis.cotton.uniformity, dasilva.soybean.uniformity, davies.pasture.uniformity, eden.tea.uniformity, hutchinson.cotton.uniformity, igue.sugarcane.uniformity, kulkarni.sorghum.uniformity, lander.multi.uniformity, lord.rice.uniformity, magistad.pineapple.uniformity, nagai.strawberry.uniformity, narain.sorghum.uniformity, robinson.peanut.uniformity, sayer.sugarcane.uniformity, strickland.apple.uniformity, strickland.grape.uniformity, strickland.peach.uniformity, strickland.tomato.uniformity
dasilva.maize, mead.turnip
nonnecke.corn.uniformity is renamed nonnecke.sweetcorn.uniformity
moore.carrots.uniformity is renamed moore.carrot.uniformity
Switch from lsmeans to emmeans in
examples.
bradley.multi.uniformity, christidis.wheat.uniformity, day.wheat.uniformity, draper.safflower.uniformity, holtsmark.timothy.uniformity, iyer.wheat.uniformity, kadam.millet.uniformity, kalamkar.wheat.uniformity, khin.rice.uniformity, kiesselbach.oats.uniformity, kristensen.barley.uniformity, lessman.sorghum.uniformity, love.cotton.uniformity, masood.rice.uniformity, mcclelland.corn.uniformity, montgomery.wheat.uniformity, moore.polebean.uniformity, moore.bushbean.uniformity, moore.sweetcorn.uniformity, moore.carrot.uniformity, moore.springcauliflower.uniformity, moore.fallcauliflower.uniformity, nonnecke.corn.uniformity, nonnecke.peas.uniformity, parker.orange.uniformity, polson.safflower.uniformity, sawyer.multi.uniformity, smith.beans.uniformity, stickler.sorghum.uniformity, wiedemann.safflower.uniformity
fisher.barley, lu.stability, tai.potato
acorsi.grayleafspot, becker.chicken, chinloy.fractionalfactorial, cramer.cucumber, crampton.pig, battese.survey, christidis.competition, depalluel.sheep. eden.nonnormal, gartner.corn, giles.wheat, gomez.heteroskedastic, gomez.nonnormal1, gomez.nonnormal2, gomez.nonnormal3, gomez.wetdry, goulden.eggs, goulden.splitsplit, gregory.cotton, hanover.whitepine, harvey.lsmeans, harville.lamb, huehn.wheat, kenward.cattle, kreusler.maize, lehner.soybeanmold, lillemo.wheat, lin.superiority, lin.unbalanced, little.splitblock, mead.lambs, omer.sorghum, onofri.winterwheat, reid.grasses, silva.cotton, urquhart.feedlot, usgs.herbicides, vaneeuwijk.fusarium, vaneeuwijk.nematodes, vaneeuwijk.drymatter, wheatley.carrot
The following data objects have been changed from lists of 2 matrices into tidy dataframes: aastveit.barley, box.cork, ortiz.tomato, talbot.potato, vargas.txe, vargas.wheat1, vargas.wheat2
Moved desplot() function to package
desplot.
Moved gge() function to package
gge.
Changed license to CC BY-SA 4.0, file LICENSE.note (similar to igraphdata).
Titles in Rd pages are more consistent.
Checked aspect ratio of field plot heatmaps where possible.
devtools::run_examples() now works even without
suggested packages installed.
Changed extensions in inst/files from .bug to .jag .
Added DOIs for most source references.
Changed all hyperlinks to plain text (for faster checking, avoids re-direct errors).
The nass.* datasets now have state names with
correct spaces. e.g. NewYork to New York.
Replaced use of gam package in examples, in favor of
mgcv package.
The mead.lambs data is renamed to mead.lamb for
consistency.
Added package logo on github.
cochran.beets, cochran.lattice, jansen.apple, jansen.carrot
besag.beans, besag.triticale, burgeuno.alpha, burgueno.rowcol, burgueno.unreplicated, steptoe.morex.pheno
asreml package from Suggests (due to CRAN check
problems).beaven.barley, perry.springwheat, ridout.appleshoots
beall.webworms, besag.endive, brandt.switchback, butron.maize, carlson.germination, cochran.factorial, connolly.potato, cornelius.maize, cullis.earlygen, fisher.latin, foulley.calving, fox.wheat, gomez.splitplot.subsample, goulden.latin, gumpertz.pepper, harrison.priors, hazell.vegetables, heady.fertilizer, holland.arthropods, hunter.corn, jansen.strawberry, kalamkar.potato.uniformity, kang.maize, kang.peanut, karcher.turfgrass, keen.potatodamage, lasrosas.corn, lee.potatoblight, lonnquist.maize, lucas.switchback, maindonald.barley, mead.cauliflower, mercer.mangold.uniformity, patterson.switchback, piepho.cocksfoot, sinclair.clover, snijders.fusarium, stirret.borers, theobald.barley, turner.herbicide, vargas.txe, vold.longterm, wallace.iowaland, walsh.cottonprice, wassom.brome.uniformity, welch.bermudagrass, weiss.incblock, weiss.lattice, yang.barley
Use if(require(lme4)) in examples. B.Ripley
request.
All data (almost) now have an example graphic.
brandle.rape, salmon.bunt
baker.barley.uniformity, bliss.borers, bond.diallel, harris.wateruse, hayman.tobacco, holshouser.splitstrip, pearce.apple, waynick.soil
crossa.wheat, garber.multi.uniformity, gomez.nitrogen, harris.multi.uniformity, hughes.grapes, li.millet.uniformity, odland.soybean.uniformity, odland.soyhay.uniformity, ratkowsky.onions, stephens.sorghum.uniformity
adugna.sorghum, ars.earlywhitecorn96, besag.bayesian, box.cork, broadbalk.wheat, byers.apple, caribbean.maize, carmer.density, cate.potassium, cleveland.soil, cochran.eelworms, cochran.wireworms, fan.stability, gomez.seedrate, gotway.hessianfly, goulden.barley.uniformity, henderson.milkfat, hernandez.nitrogen, hessling.argentina, immer.sugarbeet.uniformity, ivins.herbs, jenkyn.mildew, johnson.blight, lambert.soiltemp, lavoranti.eucalyptus, lyon.potato.uniformity, lyons.wheat, mead.cowpeamaize, mead.germination, minnesota.barley.weather, minnesota.barley.yield, nebraska.farmincome, nass.barley, nass.corn, nass.cotton, nass.hay, nass.rice, nass.sorghum, nass.soybean, nass.wheat, ortiz.tomato, pacheco.soybean, senshu.rice, snedecor.asparagus, streibig.competition, zuidhof.broiler
archbold.apple, blackman.wheat, cochran.crd, cochran.latin, darwin.maize, denis.ryegrass, digby.jointregression, engelstad.nitro, federer.diagcheck, gilmour.slatehall, john.alpha, ilra.sheep, kempton.slatehall, ryder.groundnut, vsn.lupin3
bridges.cucumber, cox.stripsplit, diggle.cow, eden.potato, gauch.soy, graybill.heteroskedastic, hildebrand.systems, hanks.sprinkler, mcconway.turnip, pearl.kernels, williams.barley.uniformity, williams.cotton.uniformity
aastveit.barley, gathmann.bt, kempton.competition, wedderburn.barley
allcroft.lodging, australia.soybean, batchelor.apple.uniformity, batchelor.lemon.uniformity, batchelor.navel1.uniformity, batchelor.navel2.uniformity, batchelor.valencia.uniformity, batchelor.walnut.uniformity, besag.elbatan, besag.met, cochran.bib, corsten.interaction, crowder.germination, denis.missing, durban.competition, durban.rowcol, durban.splitplot, federer.tobacco, gilmour.serpentine, gomez.fractionalfactorial, gomez.groupsplit, gomez.multilocsplitplot, gomez.splitsplit, gomez.stripplot, gomez.stripsplitplot, gomez.rice.uniformity, hughes.grapes, kempton.rowcol, kempton.barley.uniformity, mead.strawberry, mercer.wheat.uniformity, rothamsted.brussels, shafii.rapeseed, smith.uniformity3, stroup.nin, stroup.splitplot, student.barley, talbot.potato, theobald.covariate, thompson.cornsoy, vargas.wheat1, vargas.wheat2, verbyla.lupin, williams.trees, wiebe.wheat.uniformity, yan.winterwheat, yates.missing, yates.oats