clusterhap: Clustering Genotypes in Haplotypes
One haplotype is a combination of SNP
(Single Nucleotide Polymorphisms) within the QTL (Quantitative Trait Loci).
clusterhap groups together all individuals of a population with the same haplotype.
Each group contains individual with the same allele in each SNP,
whether or not missing data. Thus, clusterhap groups individuals,
that to be imputed, have a non-zero probability of having the same alleles
in the entire sequence of SNP's. Moreover, clusterhap calculates such
probability from relative frequencies.
| Version: |
0.1 |
| Depends: |
R (≥ 2.10) |
| Imports: |
graphics, utils |
| Suggests: |
knitr, rmarkdown, testthat |
| Published: |
2016-05-16 |
| Author: |
Gaston Quero and Sebastian Simondi , with
contributions from Victoria Bonnecarrere and Lucia Gutierrez |
| Maintainer: |
Gaston Quero <gastonquero at gmail.com> |
| License: |
GPL-3 |
| NeedsCompilation: |
no |
| CRAN checks: |
clusterhap results |
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