ggmotif: Extract and Visualize Motif Information from MEME Software
Extract and visualize motif information from XML file from MEME software.
In biology, a motif is a nucleotide or amino acid sequence pattern that is widespread
and usually assumed to be related to specifical biological functions.
There exist many software was used to discover motif sequences from a set of nucleotide
or amino acid sequences. MEME is almost the most used software to detect motif.
It's difficult for biologists to extract and visualize the location of a motif
on sequences from the results from MEME software.
| Version: |
0.2.1 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
tidyverse, dplyr, XML, magrittr, ggplot2, stringr, ggtree, ape, patchwork, ggseqlogo, memes, universalmotif, treeio, cowplot, ggsci, data.table |
| Suggests: |
knitr, rmarkdown |
| Published: |
2022-08-11 |
| Author: |
Xiang LI |
| Maintainer: |
Xiang LI <lixiang117423 at foxmail.com> |
| License: |
Artistic-2.0 |
| NeedsCompilation: |
no |
| CRAN checks: |
ggmotif results |
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