jetset: One-to-One Gene-Probeset Mapping for Affymetrix Human Microarrays

On Affymetrix gene expression microarrays, a single gene may be measured by multiple probe sets. This can present a mild conundrum when attempting to evaluate a gene "signature" that is defined by gene names rather than by specific probe sets. This package provides a one-to-one mapping from gene to "best" probe set for four Affymetrix human gene expression microarrays: hgu95av2, hgu133a, hgu133plus2, and u133x3p. This package also includes the pre-calculated probe set quality scores that were used to define the mapping.

Version:	3.4.0
Depends:	R (≥ 2.10)
Imports:	org.Hs.eg.db, AnnotationDbi
Published:	2017-04-05
Author:	Qiyuan Li, Aron Eklund
Maintainer:	Aron Eklund <eklund at cbs.dtu.dk>
License:	Artistic-2.0
URL:	http://www.cbs.dtu.dk/biotools/jetset/
NeedsCompilation:	no
Citation:	jetset citation info
Materials:	README NEWS
CRAN checks:	jetset results

Documentation:

Reference manual:	jetset.pdf
Vignettes:	Using jetset

Downloads:

Package source:	jetset_3.4.0.tar.gz
Windows binaries:	r-devel: jetset_3.4.0.zip, r-release: jetset_3.4.0.zip, r-oldrel: jetset_3.4.0.zip
macOS binaries:	r-release (arm64): jetset_3.4.0.tgz, r-oldrel (arm64): jetset_3.4.0.tgz, r-release (x86_64): jetset_3.4.0.tgz, r-oldrel (x86_64): jetset_3.4.0.tgz
Old sources:	jetset archive

Reverse dependencies:

Reverse imports:

easyDifferentialGeneCoexpression, Patterns

Linking:

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