ordinalbayes

Installing ordinalbayes

1. Install JAGS https://mcmc-jags.sourceforge.io
2. Install R https://cran.r-project.org
3. Install runjags which is hosted on CRAN and http://runjags.sourceforge.net
4. Install Bioconductor packages

1. See https://www.bioconductor.org/install/ to install base Bioconductor packages
2. To run examples using finalSet and reducedSet the DESeq2 package is needed. To install run > BiocManager::install(“DESeq2”)

5. Install ordinalbayes using

1. within R use > install.packages(“ordinalbayes”) or

2. devtools::install_github(“kelliejarcher/ordinalbayes”, build_vignettes = TRUE) This latter command takes longer because the vignette needs to be built.