To cite propr in publications use:
Quinn TP, Erb I, Gloor G, Notredame C, Richardson MF, Crowley TM (2019). “A field guide for the compositional analysis of any-omics data.” GigaScience, 8(9).
Quinn T, Erb I, Richardson MF, Crowley T (2018). “Understanding sequencing data as compositions: an outlook and review.” Bioinformatics, 34(16).
Erb I, Quinn T, Lovell D, Notredame C (2017). “Differential Proportionality - A Normalization-Free Approach To Differential Gene Expression.” Proceedings of CoDaWork 2017, The 7th Compositional Data Analysis Workshop; available under bioRxiv 134536.
Quinn T, Richardson MF, Lovell D, Crowley T (2017). “propr: An R-package for Identifying Proportionally Abundant Features Using Compositional Data Analysis.” Scientific Reports, 7(16252).
Erb I, Notredame C (2016). “How should we measure proportionality on relative gene expression data?” Theory in Biosciences, 135(1).
Lovell D, Pawlowsky-Glahn V, Egozcue JJ, Marguerat S, Bahler J (2015). “Proportionality: A Valid Alternative to Correlation for Relative Data.” PLoS Computational Biology, 11(3).
Corresponding BibTeX entries:
@Article{, title = {A field guide for the compositional analysis of any-omics data}, author = {Thomas P Quinn and Ionas Erb and Greg Gloor and Cedric Notredame and Mark F Richardson and Tamsyn M Crowley}, journal = {GigaScience}, year = {2019}, volume = {8}, number = {9}, }
@Article{, title = {Understanding sequencing data as compositions: an outlook and review}, author = {Thomas Quinn and Ionas Erb and Mark F. Richardson and Tamsyn Crowley}, journal = {Bioinformatics}, year = {2018}, volume = {34}, number = {16}, }
@Article{, title = {Differential Proportionality - A Normalization-Free Approach To Differential Gene Expression}, author = {Ionas Erb and Thomas Quinn and David Lovell and Cedric Notredame}, journal = {Proceedings of CoDaWork 2017, The 7th Compositional Data Analysis Workshop; available under bioRxiv 134536}, year = {2017}, }
@Article{, title = {propr: An R-package for Identifying Proportionally Abundant Features Using Compositional Data Analysis}, author = {Thomas Quinn and Mark F. Richardson and David Lovell and Tamsyn Crowley}, journal = {Scientific Reports}, year = {2017}, volume = {7}, number = {16252}, }
@Article{, title = {How should we measure proportionality on relative gene expression data?}, author = {Ionas Erb and Cedric Notredame}, journal = {Theory in Biosciences}, year = {2016}, volume = {135}, number = {1}, }
@Article{, title = {Proportionality: A Valid Alternative to Correlation for Relative Data}, author = {David Lovell and Vera Pawlowsky-Glahn and Juan Jose Egozcue and Samuel Marguerat and Jurg Bahler}, journal = {PLoS Computational Biology}, year = {2015}, volume = {11}, number = {3}, }