Algorithms for detecting population structure from the history of coalescent events recorded in phylogenetic trees. This method classifies each tip and internal node of a tree into disjoint sets characterized by similar coalescent patterns. The methods are described in Volz, E., Wiuf, C., Grad, Y., Frost, S., Dennis, A., & Didelot, X. (2020) <doi:10.1093/sysbio/syaa009>.
| Version: | 0.1.0 |
| Imports: | ape (≥ 5.0) |
| LinkingTo: | Rcpp |
| Suggests: | ggtree, ggplot2, knitr |
| Published: | 2020-02-17 |
| Author: | Erik Volz |
| Maintainer: | Erik Volz <erik.volz at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| CRAN checks: | treestructure results |
| Reference manual: | treestructure.pdf |
| Vignettes: |
structuredCoalescent |
| Package source: | treestructure_0.1.0.tar.gz |
| Windows binaries: | r-devel: treestructure_0.1.0.zip, r-release: treestructure_0.1.0.zip, r-oldrel: treestructure_0.1.0.zip |
| macOS binaries: | r-release (arm64): treestructure_0.1.0.tgz, r-oldrel (arm64): treestructure_0.1.0.tgz, r-release (x86_64): treestructure_0.1.0.tgz, r-oldrel (x86_64): treestructure_0.1.0.tgz |
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