ypssc: Yeast-Proteome Secondary-Structure Calculator
An extension for 'NetSurfP-2.0' (Klausen et al. (2019) <doi:10.1002/prot.25674>)
which is specifically designed to analyze the results of bottom-up-proteomics that is
primarily analyzed with 'MaxQuant' (Cox, J., Mann, M. (2008) <doi:10.1038/nbt.1511>).
This tool is designed to process a large number of yeast peptides that produced as a
results of whole yeast cell-proteome digestion and provide a coherent picture of
secondary structure of proteins.
| Version: |
1.1.0 |
| Depends: |
R (≥ 2.10) |
| Imports: |
spelling, dplyr, readxl, stringr, eulerr, Peptides, utils, svDialogs, tcltk |
| Suggests: |
rmarkdown, testthat (≥ 3.0.0) |
| Published: |
2021-11-27 |
| Author: |
Sajad Tasharofi [aut, cph],
Shashank Kumbhare [aut, cre, cph],
Bent Petersen [aut],
Morteza Khaledi [aut],
Amir Shahmoradi [aut] |
| Maintainer: |
Shashank Kumbhare <shashank.kumbhare at mavs.uta.edu> |
| License: |
GPL (≥ 3) |
| NeedsCompilation: |
no |
| CRAN checks: |
ypssc results |
Documentation:
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