Last updated on 2022-09-11 12:56:18 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.0 | 8.31 | 71.85 | 80.16 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.2.0 | 7.03 | 52.73 | 59.76 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.2.0 | 103.80 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.0 | 100.69 | OK | |||
| r-devel-windows-x86_64 | 0.2.0 | 14.00 | 93.00 | 107.00 | OK | |
| r-patched-linux-x86_64 | 0.2.0 | 7.47 | 66.28 | 73.75 | OK | |
| r-release-linux-x86_64 | 0.2.0 | 7.04 | 67.35 | 74.39 | OK | |
| r-release-macos-arm64 | 0.2.0 | 28.00 | OK | |||
| r-release-macos-x86_64 | 0.2.0 | 49.00 | OK | |||
| r-release-windows-x86_64 | 0.2.0 | 13.00 | 97.00 | 110.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.2.0 | 32.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.2.0 | 50.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 0.2.0 | 19.00 | 91.00 | 110.00 | OK |
Version: 0.2.0
Check: examples
Result: ERROR
Running examples in 'ggparallel-Ex.R' failed
The error most likely occurred in:
> ### Name: ggparallel
> ### Title: Variations of parallel coordinate plots
> ### Aliases: ggparallel
>
> ### ** Examples
>
> data(mtcars)
>
> ggparallel(list("gear", "cyl"), data=mtcars)
> ggparallel(list("gear", "cyl"), data=mtcars, method="hammock", ratio=0.25)
>
> require(RColorBrewer)
Loading required package: RColorBrewer
> require(ggplot2)
> cols <- c(brewer.pal(4, "Reds")[-1], brewer.pal(4, "Blues")[-1])
> ggparallel(list("gear", "cyl"), ratio=0.2, data=mtcars,
+ method="hammock", text.angle=0) +
+ scale_fill_manual(values=cols) + scale_colour_manual(values=cols) +
+ theme_bw()
>
> ## combination of common angle plot and hammock adjustment:
> ggparallel(list("gear", "cyl"), data=mtcars, method="adj.angle",
+ ratio=2)
Warning: Ignoring unknown aesthetics: fill
>
> ## compare with method='parset'
> ggparallel(list("gear", "cyl"), data=mtcars, method='parset')
>
> ## flip plot and rotate text
> ggparallel(list("gear", "cyl"), data=mtcars, text.angle=0) +
+ coord_flip()
>
> ## change colour scheme
> ggparallel(list("gear", "cyl"), data=mtcars, text.angle=0) +
+ coord_flip() +
+ scale_fill_brewer(palette="Set1") +
+ scale_colour_brewer(palette="Set1")
>
> ## example with more than two variables:
> titanic <- as.data.frame(Titanic)
> ggparallel(names(titanic)[c(1,4,2,1)], order=0, titanic, weight="Freq") +
+ scale_fill_brewer(palette="Paired", guide="none") +
+ scale_colour_brewer(palette="Paired", guide="none")
Warning: attributes are not identical across measure variables; they will be dropped
>
> ## Not run:
> ##D cols <- c(brewer.pal(5,"Blues")[-1], brewer.pal(3, "Oranges")[-1],
> ##D brewer.pal(3, "Greens")[-1])
> ##D ggparallel(names(titanic)[c(1,4,2,1)], order=0, titanic, weight="Freq") +
> ##D scale_fill_manual(values=cols, guide="none") +
> ##D scale_colour_manual(values=cols, guide="none") + theme_bw()
> ##D
> ##D ## hammock plot with same width lines
> ##D ggparallel(names(titanic)[c(1,4,2,3)], titanic, weight=1, asp=0.5,
> ##D method="hammock", ratio=0.2, order=c(0,0)) +
> ##D theme( legend.position="none") +
> ##D scale_fill_brewer(palette="Paired") +
> ##D scale_colour_brewer(palette="Paired")
> ##D
> ##D ## hammock plot with line widths adjusted by frequency
> ##D ggparallel(names(titanic)[c(1,4,2,3)], titanic, weight="Freq",
> ##D asp=0.5, method="hammock", order=c(0,0), text.angle=0,
> ##D width=0.45) +
> ##D theme( legend.position="none")
> ##D
> ##D
> ##D ## biological examples: genes and pathways
> ##D data(genes)
> ##D cols <- c(rep("grey80", 24), brewer.pal("YlOrRd", n = 9))
> ##D genes$chrom <- factor(genes$chrom, levels=c(paste("chr", 1:22, sep=""), "chrX", "chrY"))
> ##D ggparallel(list("path", "chrom"), text.offset=c(0.03, 0,-0.03),
> ##D data = genes, width=0.1, order=c(1,0), text.angle=0,
> ##D color="white",
> ##D factorlevels = c(sapply(unique(genes$chrom), as.character),
> ##D unique(genes$path))) +
> ##D scale_fill_manual(values = cols, guide="none") +
> ##D scale_colour_manual(values = cols, guide="none") +
> ##D coord_flip()
> ## End(Not run)
>
> data(Titanic)
> titanic <- as.data.frame(Titanic)
>
> titanic$SexSurvived <- with(titanic, interaction(Sex, Survived))
> titanic$SexClassSurvived <- with(titanic, interaction(Sex,Class, Survived))
>
> ggparallel(vars=list("Survived", "SexSurvived", "SexClassSurvived"), weight="Freq", data=titanic) +
+ theme(legend.position="none") +
+ scale_fill_manual(values = rep(c("Orange", "Steelblue"), 14)) +
+ scale_colour_manual(values = rep(c("Orange", "Steelblue"), 14))
>
>
>
> ### * <FOOTER>
> ###
> cleanEx()
detaching 'package:RColorBrewer'
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed: 11.97 0.34 12.31 NA NA
> grDevices::dev.off()
null device
1
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
Flavor: r-release-windows-x86_64