As a successor of the packages 'BatchJobs' and 'BatchExperiments', this package provides a parallel implementation of the Map function for high performance computing systems managed by schedulers 'IBM Spectrum LSF' (<https://www.ibm.com/products/hpc-workload-management>), 'OpenLava' (<https://www.openlava.org/>), 'Univa Grid Engine'/'Oracle Grid Engine' (<https://www.univa.com/>), 'Slurm' (<https://slurm.schedmd.com/>), 'TORQUE/PBS' (<https://adaptivecomputing.com/cherry-services/torque-resource-manager/>), or 'Docker Swarm' (<https://docs.docker.com/engine/swarm/>). A multicore and socket mode allow the parallelization on a local machines, and multiple machines can be hooked up via SSH to create a makeshift cluster. Moreover, the package provides an abstraction mechanism to define large-scale computer experiments in a well-organized and reproducible way.
Version: | 0.9.15 |
Depends: | R (≥ 3.0.0) |
Imports: | backports (≥ 1.1.2), base64url (≥ 1.1), brew, checkmate (≥ 1.8.5), data.table (≥ 1.11.2), digest (≥ 0.6.9), fs (≥ 1.2.0), parallel, progress (≥ 1.1.1), R6, rappdirs, stats, stringi, utils, withr (≥ 2.0.0) |
Suggests: | debugme, doParallel, doMPI, e1071, foreach, future, future.batchtools, knitr, parallelMap, ranger, rmarkdown, rpart, snow, testthat, tibble |
Published: | 2021-01-11 |
Author: | Michel Lang |
Maintainer: | Michel Lang <michellang at gmail.com> |
BugReports: | https://github.com/mllg/batchtools/issues |
License: | LGPL-3 |
URL: | https://github.com/mllg/batchtools |
NeedsCompilation: | yes |
Citation: | batchtools citation info |
Materials: | README NEWS |
In views: | HighPerformanceComputing |
CRAN checks: | batchtools results |
Reference manual: | batchtools.pdf |
Vignettes: |
batchtools |
Package source: | batchtools_0.9.15.tar.gz |
Windows binaries: | r-devel: batchtools_0.9.15.zip, r-release: batchtools_0.9.15.zip, r-oldrel: batchtools_0.9.15.zip |
macOS binaries: | r-release (arm64): batchtools_0.9.15.tgz, r-oldrel (arm64): batchtools_0.9.15.tgz, r-release (x86_64): batchtools_0.9.15.tgz, r-oldrel (x86_64): batchtools_0.9.15.tgz |
Old sources: | batchtools archive |
Reverse imports: | aslib, Certara.R, future.batchtools, InPAS, ldaPrototype, Rcwl, spotGUI |
Reverse suggests: | babsim.hospital, BiocParallel, mlr, parallelMap, pulsar, SPOT, systemPipeR |
Reverse enhances: | simpleCache |
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