Updated the DESCRIPTION to use single quotes for package name.
Deleted the extra word “into” in DESCRIPTION.
Deleted “| file LICENSE” in DESCRIPTION and the file.
Used Authors@R field in DESCRIPTION.
Added Rd-tag in possible_artifacts.Rd and rare_signatures.Rd.
Removed in the examples.
Wrapped examples that need packages in ‘Suggests’ in if(requireNamespace("pkgname")){}
.
Applied tidyverse style to existing code
Added new exported function possible_artifacts
, rare_signatures
GRCh37
, GRCh38
, mm9
, mm10
and rn6
Used GRCh38 signatures as the default for SBS96 and DBS78 in variable signature
, COSMIC_v3.2
, COSMIC_v3.1
and COSMIC_v3.0
Removed genome
level structure from variables signature
, COSMIC_v3.2
, COSMIC_v3.1
and COSMIC_v3.0
Removed argument cosmic_version
from exported function get_etiology
Added explanation for “-E” in function SBS96_ID_to_SBS192_ID
Added exported package data variable signature
, etiology
, COSMIC_v3.2
, COSMIC_v3.1
and COSMIC_v3.0
Added exported function get_etiology
, SBS96_ID_to_SBS192_ID
and automated tests