palmid 0.0.3

• Initial release. palmid is a containerized analysis suite and R-package for the classification of viral RNA-dependent RNA Polymerases (RdRP) based on the palmprint sub-domain and the RNA viral palmprint database palmdb.

Features

• Reading of palmscan and palmDB/DIAMOND-based alignment output files.
• Automated access to the Serratus SQL-server and cross-database analysis of input sequences.
• Taxonomic inference of input viral sequencing based on RdRP protein identity.
• Geospatial and temporal analysis of virus-sequence matches.
• Virus-associated host organism analysis of the Sequence Read Archive.
• Containerized work environment for reproducible deployment.