Can be used for simulation of organisms living in
communities (Bauer and Zimmermann (2017) <doi:10.1371/journal.pcbi.1005544>).
Each organism is represented individually and genome scale
metabolic models determine the uptake and release of compounds. Biological
processes such as movement, diffusion, chemotaxis and kinetics are available
along with data analysis techniques.
| Version: |
1.8.2 |
| Depends: |
R (≥ 3.5.0), sybil (≥ 2.1.3), ReacTran (≥ 1.4.2), deSolve (≥ 1.12), Matrix (≥ 1.2) |
| Imports: |
methods, utils, stats, graphics, ggplot2, reshape2, glpkAPI, plyr, Rcpp, igraph, stringr, R.matlab |
| LinkingTo: |
Rcpp, RcppArmadillo, RcppEigen |
| Suggests: |
parallel, knitr, rmarkdown |
| Published: |
2020-05-20 |
| Author: |
Eugen Bauer [aut],
Johannes Zimmermann [aut, cre] |
| Maintainer: |
Johannes Zimmermann <j.zimmermann at iem.uni-kiel.de> |
| BugReports: |
https://github.com/euba/BacArena/issues |
| License: |
GPL-3 | file LICENSE |
| URL: |
https://BacArena.github.io/ |
| NeedsCompilation: |
yes |
| Materials: |
README NEWS |
| CRAN checks: |
BacArena results |