EmbedSOM: Fast Embedding Guided by Self-Organizing Map

Provides a smooth mapping of multidimensional points into low-dimensional space defined by a self-organizing map. Designed to work with 'FlowSOM' and flow-cytometry use-cases. See Kratochvil et al. (2019) <doi:10.12688/f1000research.21642.1>.

Version:	2.1.2
Depends:	R (≥ 3.2)
Imports:	FNN, ggplot2, igraph, Matrix, Rtsne, umap, uwot
Suggests:	knitr, rmarkdown
Published:	2022-07-05
Author:	Mirek Kratochvil [aut, cre], Sofie Van Gassen [cph], Britt Callebaut [cph], Yvan Saeys [cph], Ron Wehrens [cph]
Maintainer:	Mirek Kratochvil <exa.exa at gmail.com>
License:	GPL (≥ 3)
URL:	https://github.com/exaexa/EmbedSOM
NeedsCompilation:	yes
Citation:	EmbedSOM citation info
Materials:	README
CRAN checks:	EmbedSOM results

Documentation:

Reference manual:	EmbedSOM.pdf
Vignettes:	EmbedSOM basic embedding

Downloads:

Package source:	EmbedSOM_2.1.2.tar.gz
Windows binaries:	r-devel: EmbedSOM_2.1.2.zip, r-release: EmbedSOM_2.1.2.zip, r-oldrel: EmbedSOM_2.1.2.zip
macOS binaries:	r-release (arm64): EmbedSOM_2.1.2.tgz, r-oldrel (arm64): EmbedSOM_2.1.2.tgz, r-release (x86_64): EmbedSOM_2.1.2.tgz, r-oldrel (x86_64): EmbedSOM_2.1.2.tgz
Old sources:	EmbedSOM archive

Linking:

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