GillespieSSA2: Gillespie's Stochastic Simulation Algorithm for Impatient People
A fast, scalable, and versatile framework for simulating large systems with Gillespie's Stochastic Simulation Algorithm ('SSA'). This package is the spiritual successor to the 'GillespieSSA' package originally written by Mario Pineda-Krch. Benefits of this package include major speed improvements (>100x), easier to understand documentation, and many unit tests that try to ensure the package works as intended. Cannoodt and Saelens et al. (2020) <doi:10.1101/2020.02.06.936971>.
| Version: | 0.2.8 |
| Depends: | R (≥ 3.3) |
| Imports: | assertthat, dplyr, dynutils, Matrix, methods, purrr, Rcpp (≥ 0.12.3), RcppXPtrUtils, readr, rlang, stringr, tidyr |
| LinkingTo: | Rcpp |
| Suggests: | covr, ggplot2, GillespieSSA, knitr, rmarkdown, testthat (≥ 2.1.0) |
| Published: | 2021-05-18 |
| Author: | Robrecht Cannoodt 
[aut, cre],
Wouter Saelens
[aut] |
| Maintainer: | Robrecht Cannoodt <rcannood at gmail.com> |
| BugReports: | https://github.com/rcannood/GillespieSSA2/issues |
| License: | GPL (≥ 3) |
| URL: | https://github.com/rcannood/GillespieSSA2 |
| NeedsCompilation: | yes |
| Citation: | GillespieSSA2 citation info |
| Materials: | README NEWS |
| CRAN checks: | GillespieSSA2 results |
Documentation:
Downloads:
| Package source: | GillespieSSA2_0.2.8.tar.gz |
| Windows binaries: | r-devel: GillespieSSA2_0.2.8.zip, r-release: GillespieSSA2_0.2.8.zip, r-oldrel: GillespieSSA2_0.2.8.zip |
| macOS binaries: | r-release (arm64): GillespieSSA2_0.2.8.tgz, r-oldrel (arm64): GillespieSSA2_0.2.8.tgz, r-release (x86_64): GillespieSSA2_0.2.8.tgz, r-oldrel (x86_64): GillespieSSA2_0.2.8.tgz |
| Old sources: | GillespieSSA2 archive |
Linking:
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