Application of 'RaceID' allows inference of cell types and prediction of lineage trees by he StemID2 algorithm. Herman, J.S., Sagar, Grün D. (2018) <doi:10.1038/nmeth.4662>.
| Version: | 0.2.6 |
| Depends: | R (≥ 3.5.0) |
| Imports: | coop, compiler, cluster, FateID, FNN, fpc, ggplot2, grDevices, harmony, ica, igraph, irlba, leiden, locfit, methods, MASS, Matrix, matrixStats, parallel, pheatmap, princurve, propr, quadprog, randomForest, runner, Rcpp, RColorBrewer, Rtsne, umap, vegan |
| LinkingTo: | Rcpp (≥ 0.11.0) |
| Suggests: | batchelor, DESeq2, knitr, rmarkdown, SingleCellExperiment, slingshot, SummarizedExperiment |
| Published: | 2022-08-19 |
| Author: | Dominic Grün |
| Maintainer: | Dominic Grün <dominic.gruen at gmail.com> |
| License: | GPL-3 |
| NeedsCompilation: | yes |
| CRAN checks: | RaceID results |
| Reference manual: | RaceID.pdf |
| Vignettes: |
An introduction to RaceID and StemID. |
| Package source: | RaceID_0.2.6.tar.gz |
| Windows binaries: | r-devel: RaceID_0.2.6.zip, r-release: RaceID_0.2.6.zip, r-oldrel: RaceID_0.2.6.zip |
| macOS binaries: | r-release (arm64): RaceID_0.2.6.tgz, r-oldrel (arm64): RaceID_0.2.6.tgz, r-release (x86_64): RaceID_0.2.6.tgz, r-oldrel (x86_64): RaceID_0.2.6.tgz |
| Old sources: | RaceID archive |
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