Rphylopars: Phylogenetic Comparative Tools for Missing Data and
Within-Species Variation
Tools for performing phylogenetic comparative methods for datasets with with multiple observations per species (intraspecific variation or measurement error) and/or missing data (Goolsby et al. 2017). Performs ancestral state reconstruction and missing data imputation on the estimated evolutionary model, which can be specified as Brownian Motion, Ornstein-Uhlenbeck, Early-Burst, Pagel's lambda, kappa, or delta, or a star phylogeny.
| Version: |
0.3.9 |
| Depends: |
ape |
| Imports: |
Rcpp, doBy, phylolm, phytools, Matrix, MASS, numDeriv |
| LinkingTo: |
Rcpp, RcppArmadillo |
| Published: |
2022-05-09 |
| Author: |
Eric W. Goolsby [aut, cre],
Jorn Bruggeman [aut],
Cecile Ane [aut] |
| Maintainer: |
Eric W. Goolsby <eric.goolsby.evolution at gmail.com> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: |
https://github.com/ericgoolsby/Rphylopars/wiki |
| NeedsCompilation: |
yes |
| Materials: |
README |
| In views: |
MissingData |
| CRAN checks: |
Rphylopars results |
Documentation:
Downloads:
Reverse dependencies:
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