kinship2: Pedigree Functions
Routines to handle family data with a pedigree object (2014, <doi:10.1159/000363105>). The initial purpose was to create correlation structures that describe family relationships such as kinship and identity-by-descent, which can be used to model family data in mixed effects models, such as in the coxme function. Also includes a tool for pedigree drawing which is focused on producing compact layouts without intervention. Recent additions include utilities to trim the pedigree object with various criteria, and kinship for the X chromosome.
| Version: |
1.8.5 |
| Depends: |
R (≥ 3.4.0), Matrix, quadprog |
| Imports: |
graphics, stats, methods |
| Suggests: |
knitr |
| Published: |
2020-02-10 |
| Author: |
Jason Sinnwell [aut, cre],
Terry Therneau [aut],
Daniel Schaid [ctb],
Elizabeth Atkinson [ctb],
Carly Mester [ctb] |
| Maintainer: |
Jason Sinnwell <sinnwell.jason at mayo.edu> |
| License: |
GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: |
https://cran.r-project.org/package=kinship2 |
| NeedsCompilation: |
no |
| Materials: |
NEWS |
| CRAN checks: |
kinship2 results |
Documentation:
Downloads:
Reverse dependencies:
| Reverse depends: |
ElstonStewart, FamAgg, GESE, MasterBayes, pedgene |
| Reverse imports: |
famSKATRC, fat2Lpoly, GENLIB, LCAextend, LRQMM, Mega2R, MESS, optiSel, paramlink, pedtools, ribd, RVS, SimRVPedigree, skater |
| Reverse suggests: |
coxme, gap, Mangrove, pbatR, pedmod, simfam |
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